1EXL
STRUCTURE OF AN 11-MER DNA DUPLEX CONTAINING THE CARBOCYCLIC NUCLEOTIDE ANALOG: 2'-DEOXYARISTEROMYCIN
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 280 OD260 DNA; 10 mM phosphate buffer; 50 mM NaCl and 1mM EDTA | 90% H2O, 10% D2O (v/v); 99.96% D2O | 50 mM NaCl | 6.9 | 1 atm | 278 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics; matrix relaxation | Felix |
NMR Ensemble Information | |
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Conformer Selection Criteria | all calculated structures submitted, back calculated data agree with experimental NOESY spectrum |
Conformers Calculated Total Number | 30 |
Conformers Submitted Total Number | 30 |
Representative Model | 15 (minimized average structure) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homonuclear techniques |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | Felix | 95 | MSI |
2 | data analysis | MARDIGRAS | 2.0 | Borgias,B.A. & James, T.L. |
3 | structure solution | X-PLOR | 3.8 | Brunger, A. |
4 | refinement | X-PLOR | 3.8 | Brunger, A. |