Refined NMR solution structure of the C-terminal UBA domain of the human homologue of RAD23A (HHR23A)
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D NOESY | 1mM Uba-domain, chemically synthesized; 50mM potassium phosphate pH 6.5; 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM sodium phosphate, 100mM sodium chloride | 6.5 | ambient | 300 | |
| 2 | 3D_13C-separated_NOESY | 1mM Uba-domain, chemically synthesized; 50mM potassium phosphate pH 6.5; 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM sodium phosphate, 100mM sodium chloride | 6.5 | ambient | 300 | |
| 3 | 3D_15N-separated_NOESY | 1mM Uba-domain, chemically synthesized; 50mM potassium phosphate pH 6.5; 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM sodium phosphate, 100mM sodium chloride | 6.5 | ambient | 300 | |
| 4 | DQF-COSY | 1mM Uba-domain, chemically synthesized; 50mM potassium phosphate pH 6.5; 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM sodium phosphate, 100mM sodium chloride | 6.5 | ambient | 300 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DRX | 600 |
| 2 | Bruker | DRX | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing, molecular dynamics | The structures are based on a total of 796 restraints, 779 are NOE-derived, 17 distance restraints are from hydrogen bonds | XwinNMR |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with favorable non-bond energy, structures with the least restraint violations, structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 18 |
| Representative Model | 6 (closest to the average) |
| Additional NMR Experimental Information | |
|---|---|
| Details | This structure was determined using triple-resonance NMR spectroscopy |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | XwinNMR | 1.3 | Bruker |
| 2 | data analysis | XEASY | 1.3.10 | Bartels, Xia, Billeter, Guntert, Wuthrich |
| 3 | structure solution | X-PLOR | 3.1 | Brunger |
| 4 | refinement | X-PLOR | 3.1 | Brunger |














