1CQO

NMR STRUCTURE OF THE PALINDROMIC DNA DECAMER D(GCGTTAACGC)2


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1Double-Quantum2mM d(GCGTTAACGC); 20mM Na3PO4, 50mM NaCl, 0.1% NaN3.99.9% D2O50mM NaCl, 20mM NaPO47ambient300
2DQF-COSY2mM d(GCGTTAACGC); 20mM Na3PO4, 50mM NaCl, 0.1% NaN3.99.9% D2O50mM NaCl, 20mM NaPO47ambient300
3E-COSY2mM d(GCGTTAACGC); 20mM Na3PO4, 50mM NaCl, 0.1% NaN3.99.9% D2O50mM NaCl, 20mM NaPO47ambient300
42D NOESY2mM d(GCGTTAACGC); 20mM Na3PO4, 50mM NaCl, 0.1% NaN3.99.9% D2O50mM NaCl, 20mM NaPO47ambient300
52D NOESY2mM d(GCGTTAACGC); 20mM Na3PO4, 50mM NaCl, 0.1% NaN3.95% H2O/5% D2O50mM NaCl, 20mM NaPO47ambient300
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAMX600
2BrukerAMX500
NMR Refinement
MethodDetailsSoftware
Restrained molecular dynamics. Relaxation matrix refinement.Direct relaxation matrix refinement with explicit solvent. Details in primary citation.Felix
NMR Ensemble Information
Conformer Selection Criteriaall calculated structures submitted
Conformers Calculated Total Number10
Conformers Submitted Total Number10
Representative Model5 (closest to the average)
Additional NMR Experimental Information
DetailsThis structure was determined using standard 2D homonuclear techniques.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingFelix95Molecular Simulations, Inc.
2structure solutionNAB2.1Macke, et. al.
3refinementAmber5.0Pearlman, et. al.
4iterative matrix relaxationAmber5.0Pearlman, et. al.