☰ Navigation Tabs
HUMAN PTP1B CATALYTIC DOMAIN COMPLEXED WITH TPI
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HNP PDB ENTRY 2HNP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 pH 8.0
Crystal Properties Matthews coefficient Solvent content 3.61 65.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.47 α = 90 b = 88.47 β = 90 c = 104.62 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 300 mm plate MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 24 94.4 0.033 0.033 16.8 2.3 28772 33.99
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.35 2.48 93.8 0.089 0.089 8.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2HNP 2.35 14 18772 954 94.4 0.204 0.256 0.2469 THIN SHELLS 25.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 33.8 p_staggered_tor 14.8 p_scangle_it 5.565 p_mcangle_it 4.039 p_scbond_it 3.865 p_mcbond_it 2.582 p_planar_tor 1.4 p_multtor_nbd 0.173 p_chiral_restr 0.115 p_xhyhbond_nbd 0.102
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 33.8 p_staggered_tor 14.8 p_scangle_it 5.565 p_mcangle_it 4.039 p_scbond_it 3.865 p_mcbond_it 2.582 p_planar_tor 1.4 p_multtor_nbd 0.173 p_chiral_restr 0.115 p_xhyhbond_nbd 0.102 p_xyhbond_nbd 0.102 p_hb_or_metal_coord 0.05 p_planar_d 0.025 p_angle_d 0.024 p_plane_restr 0.0164 p_bond_d 0.007 p_angle_deg p_singtor_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2426 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 29
Software Software Software Name Purpose AMoRE phasing REFMAC refinement DENZO data reduction CCP4 data scaling