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X-RAY STRUCTURE OF THE COMPLEX OF HUMAN ALPHA THROMBIN WITH THE INHIBITOR SDZ 229-357
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HAI PDB ENTRY 1HAI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.3 pH 7.3
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71 α = 90 b = 72.2 β = 100.7 c = 73.1 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 DIFFRACTOMETER ENRAF-NONIUS FAST 1996-03-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR571
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 15 95 0.104 7.8 2.7 15423 2 29.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 94.6 0.432 3.6 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION DIFFERENCE FOURIER A POSTERIORI PDB ENTRY 1HAI 2.3 8 15004 1517 94.9 0.187 0.187 0.1756 0.232 0.1768 RANDOM 25.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.3 x_scangle_it 6.28 x_scbond_it 4.5 x_mcangle_it 4.24 x_mcbond_it 2.81 x_angle_deg 2.5 x_improper_angle_d 1.37 x_bond_d 0.015 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.3 x_scangle_it 6.28 x_scbond_it 4.5 x_mcangle_it 4.24 x_mcbond_it 2.81 x_angle_deg 2.5 x_improper_angle_d 1.37 x_bond_d 0.015 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2615 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 77
Software Software Software Name Purpose MADNES data collection PROCOR data reduction Agrovata data reduction X-PLOR model building X-PLOR refinement MADNES data reduction PROCOR data scaling Agrovata data scaling X-PLOR phasing