☰ Navigation Tabs
RECOMBINANT HORSERADISH PEROXIDASE C1A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SCH PDB ENTRY 1SCH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 16% (W/V) PEG 4000, 0.2 M ZINC ACETATE AND 0.1 M CACODYLATE BUFFER, PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.04 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 159.17 α = 90 b = 159.17 β = 90 c = 114.27 γ = 120
Symmetry Space Group P 31 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 IMAGE PLATE RIGAKU 1995-08-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 100 83.6 0.07 0.07 1.7 73216 12.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.15 2.9 65.4 0.4 0.4 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SCH 2.15 100 74993 7526 83.7 0.222 0.222 0.242 RANDOM 24.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 22.8 x_scangle_it 4.34 x_scbond_it 2.84 x_mcangle_it 2.22 x_improper_angle_d 1.81 x_angle_deg 1.8 x_mcbond_it 1.39 x_bond_d 0.016 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 22.8 x_scangle_it 4.34 x_scbond_it 2.84 x_mcangle_it 2.22 x_improper_angle_d 1.81 x_angle_deg 1.8 x_mcbond_it 1.39 x_bond_d 0.016 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2922 Nucleic Acid Atoms Solvent Atoms 450 Heterogen Atoms 49
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling X-PLOR model building X-PLOR refinement X-PLOR phasing