☰ Navigation Tabs
ZIF268 ZINC FINGER-DNA COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZAA PDB ENTRY 1ZAA, WITHOUT WATERS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 2.5-5% PEG 400; 500-700MM NACL; 25MM BIS-TRIS PROPANE, PH 8.0, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.4 55.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.4 α = 90 b = 56.2 β = 90 c = 130.8 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 IMAGE PLATE RIGAKU RAXIS IIC YALE MIRRORS 1994-08-01 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 96.6 0.062 0.025 34.5 6.5 22749 -2 -2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 92.8 0.534 0.223 2 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGOUT PDB ENTRY 1ZAA, WITHOUT WATERS 1.6 6 2 19207 2312 87 0.203 0.195 0.195 0.242 RANDOM 30
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d_na 29.8 x_dihedral_angle_d 22.8 x_scangle_it 3.3 x_angle_deg_na 3.02 x_mcangle_it 2.38 x_scbond_it 2.03 x_mcbond_it 1.46 x_angle_deg 1.29 x_improper_angle_d 1.23 x_improper_angle_d_na 0.6
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d_na 29.8 x_dihedral_angle_d 22.8 x_scangle_it 3.3 x_angle_deg_na 3.02 x_mcangle_it 2.38 x_scbond_it 2.03 x_mcbond_it 1.46 x_angle_deg 1.29 x_improper_angle_d 1.23 x_improper_angle_d_na 0.6 x_bond_d_na 0.009 x_bond_d 0.007 x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_prot x_dihedral_angle_d_prot x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 734 Nucleic Acid Atoms 445 Solvent Atoms 148 Heterogen Atoms 3
Software Software Software Name Purpose X-PLOR model building X-PLOR refinement DENZO data reduction SCALEPACK data scaling X-PLOR phasing