1ZYF

Structure of a Supercoiling Responsive DNA Site


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY10mM sodium phosphate (pH 6.8), 100mM NaCl90% H2O/10% D2O10mM sodium phosphate, 100mM NaCl6.8ambient295
22D NOESY10mM sodium phosphate (pH 6.8), 100mM NaCl100% D2O10mM sodium phosphate, 100mM NaCl6.8ambient295
32D TOCSY10mM sodium phosphate (pH 6.8), 100mM NaCl100% D2O10mM sodium phosphate, 100mM NaCl6.8ambient295
42D COSY10mM sodium phosphate (pH 6.8), 100mM NaCl100% D2O10mM sodium phosphate, 100mM NaCl6.8ambient295
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2BrukerDRX600
NMR Refinement
MethodDetailsSoftware
simulated annealing, torsion angle dynamics (XPLOR-NIH)NMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with acceptable covalent geometry, structures with favorable non-bond energy, structures with the least restraint violations, structures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number26
Representative Model1 (minimized average structure)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe1995Bax, A.
2iterative matrix relaxationMARDIGRAS3.2James, A.
3collectionVNMR3.1CVarian Inc.
4structure solutionX-PLORXPLOR-NIHBrunger
5refinementX-PLORXPLOR-NIH