1ZY3 | pdb_00001zy3

Structural model of complex of Bcl-w protein with Bid BH3-peptide


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1HNCACB0.7 mM Bcl-w U-15N,13C, 0.7 mM Bid BH3-peptide, 20 mM phosphate buffer, 90% H2O, 10% D2O90% H2O/10% D2O10 mM NaCl7.01 atm303
2CBCA(CO)HN0.7 mM Bcl-w U-15N,13C, 0.7 mM Bid BH3-peptide, 20 mM phosphate buffer, 90% H2O, 10% D2O90% H2O/10% D2O10 mM NaCl7.01 atm303
315N-edited NOESY0.7 mM Bcl-w U-15N, 0.7 mM Bid BH3-peptide, 20 mM phosphate buffer, 90% H2O, 10% D2O90% H2O/10% D2O10 mM NaCl7.01 atm303
4HNHA0.7 mM Bcl-w U-15N, 0.7 mM Bid BH3-peptide, 20 mM phosphate buffer, 90% H2O, 10% D2O90% H2O/10% D2O10 mM NaCl7.01 atm303
515N-edited NOESY0.7 mM Bid BH3-peptide U-15N, 0.7 mM Bcl-w, 20 mM phosphate buffer, 90% H2O, 10% D2O90% H2O/10% D2O10 mM NaCl7.01 atm303
615N-1H HSQC0.7 mM Bid BH3-peptide U-15N, 0.7 mM Bcl-w, 20 mM phosphate buffer, 90% H2O, 10% D2O90% H2O/10% D2O10 mM NaCl7.01 atm303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianUnity Inova800
2BrukerDRX600
NMR Refinement
MethodDetailsSoftware
Rigid body docking, semi-flexible simulated annealing, refinement using explicit water200 conformers were obtained in the rigid body docking and 100 best conformers were selected for semi-flexible simulated annealing following by refinementHADDOCK
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations, structures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThis model structure was obtained using ambigous chemical shift perturbation constraints, NOE distances and hydrogen bonds
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementHADDOCK1.2Bonvin et al.
2processingNMRPipe2.0Delargio et al.
3data analysisXEASY1.3.13Bartels et al.
4processingHADDOCK1.2Bonvin et al.