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The structure of a putative mannosephosphate isomerase from Archaeoglobus fulgidus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.6 298 PEG 5k MME, Na Acetate, ethylene glycol, sucrose, glycerol, pH 5.6, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.5 66.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 160.045 α = 90 b = 160.045 β = 90 c = 160.045 γ = 90
Symmetry Space Group P 43 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 CCD ADSC QUANTUM 315 2004-10-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97930 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 37.72 99.9 0.072 9.1 9.4 31599 31599 45.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 97.8 0.446 4.3 8.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 37.72 31599 30005 1593 99.89 0.16383 0.16383 0.16243 0.19081 0.1872 RANDOM 32.343
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.179 r_dihedral_angle_4_deg 19.561 r_dihedral_angle_3_deg 13.469 r_dihedral_angle_1_deg 6.358 r_scangle_it 3.147 r_scbond_it 1.951 r_angle_refined_deg 1.264 r_mcangle_it 1.227 r_mcbond_it 0.864 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.179 r_dihedral_angle_4_deg 19.561 r_dihedral_angle_3_deg 13.469 r_dihedral_angle_1_deg 6.358 r_scangle_it 3.147 r_scbond_it 1.951 r_angle_refined_deg 1.264 r_mcangle_it 1.227 r_mcbond_it 0.864 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.214 r_nbd_refined 0.189 r_symmetry_hbond_refined 0.145 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.081 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2370 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing O model building Coot model building CCP4 phasing ARP/wARP model building