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Structural comparison of Yeast snoRNP and splicesomal protein snu13p with its homologs
Crystallization Crystal Properties Matthews coefficient Solvent content 2.86 56.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.133 α = 90 b = 70.133 β = 90 c = 54.701 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE RIGAKU RAXIS IIC 2004-01-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 35.14 20398 1119 90.59 0.18418 0.1828 0.1867 0.20864 0.1858 RANDOM 17.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.02 0.04 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.274 r_dihedral_angle_4_deg 20.853 r_dihedral_angle_3_deg 14.11 r_dihedral_angle_1_deg 4.828 r_scangle_it 2.599 r_scbond_it 1.558 r_angle_refined_deg 1.119 r_mcangle_it 0.788 r_mcbond_it 0.476 r_nbtor_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.274 r_dihedral_angle_4_deg 20.853 r_dihedral_angle_3_deg 14.11 r_dihedral_angle_1_deg 4.828 r_scangle_it 2.599 r_scbond_it 1.558 r_angle_refined_deg 1.119 r_mcangle_it 0.788 r_mcbond_it 0.476 r_nbtor_refined 0.293 r_symmetry_vdw_refined 0.21 r_nbd_refined 0.195 r_symmetry_hbond_refined 0.127 r_xyhbond_nbd_refined 0.107 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1882 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CNS refinement