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Crystal Structure of the GTP-bound form of RasQ61G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 22% PEG4000, 200mM Ca Acetate, 100 mM Tris-HCl, 10 mM MgCl2, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.61 54.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.776 α = 90 b = 88.776 β = 90 c = 134.392 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Monochromator 2004-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 1.0 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 30.8 99.4 0.086 24.1 7.1 30980 30980 2 24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.54 99.8 0.465 3.8 6 32638
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 30.79 30980 30980 1653 99.44 0.146 0.146 0.14419 0.1472 0.17403 0.1771 RANDOM 16.236
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.03 -0.07 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.017 r_dihedral_angle_4_deg 15.537 r_dihedral_angle_3_deg 14.75 r_dihedral_angle_1_deg 9.712 r_sphericity_free 6.503 r_scangle_it 4.064 r_scbond_it 2.913 r_sphericity_bonded 2.487 r_angle_other_deg 2.348 r_mcangle_it 2.119
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.017 r_dihedral_angle_4_deg 15.537 r_dihedral_angle_3_deg 14.75 r_dihedral_angle_1_deg 9.712 r_sphericity_free 6.503 r_scangle_it 4.064 r_scbond_it 2.913 r_sphericity_bonded 2.487 r_angle_other_deg 2.348 r_mcangle_it 2.119 r_mcbond_it 1.573 r_rigid_bond_restr 1.529 r_angle_refined_deg 1.489 r_mcbond_other 0.495 r_symmetry_vdw_refined 0.397 r_symmetry_metal_ion_refined 0.334 r_symmetry_vdw_other 0.266 r_symmetry_hbond_refined 0.261 r_nbd_refined 0.208 r_nbd_other 0.197 r_xyhbond_nbd_refined 0.188 r_nbtor_refined 0.18 r_metal_ion_refined 0.128 r_nbtor_other 0.091 r_chiral_restr 0.083 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1355 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHELX phasing