☰ Navigation Tabs
C-terminal domain of Insulin-like Growth Factor Binding Protein-1 isolated from human amniotic fluid complexed with Iron(II)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 dioxane, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.9 35.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.21 α = 90 b = 59.6 β = 90 c = 31.06 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH Double Crystal (Si111, Si220) or White Beam 2004-01-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.0 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.818 22.34 97 0.044 8.9 3.48 6773 6773
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.818 1.88 98.3 0.085 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.818 22.34 6577 6267 310 97.15 0.232 0.22333 0.22153 0.2266 0.26425 0.2653 RANDOM 24.253
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.28 -0.68 -0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.466 r_dihedral_angle_3_deg 13.755 r_dihedral_angle_4_deg 12.326 r_dihedral_angle_1_deg 5.472 r_scangle_it 2.729 r_scbond_it 1.75 r_angle_refined_deg 1.421 r_mcangle_it 1.252 r_mcbond_it 0.779 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.466 r_dihedral_angle_3_deg 13.755 r_dihedral_angle_4_deg 12.326 r_dihedral_angle_1_deg 5.472 r_scangle_it 2.729 r_scbond_it 1.75 r_angle_refined_deg 1.421 r_mcangle_it 1.252 r_mcbond_it 0.779 r_nbtor_refined 0.31 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.186 r_symmetry_hbond_refined 0.166 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.079 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 642 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling XFIT data reduction