NOE-based solution structure with dipolar coupling restraints of rat OMP (olfactory marker protein)
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 4D_13C-separated_NOESY | 1.5-1.8 mM rat OMP, 10mM phosphate buffer, 0.1 mM EDTA, 0.3 mM NaN3,95% H2O, 5% D2O | 95% H2O/5% D2O | 10 mM phosphate | 6.6 | ambient | 310 | |
| 2 | 4D_13C/15N-separated_NOESY | 1.5-1.8 mM rat OMP, 10mM phosphate buffer, 0.1 mM EDTA, 0.3 mM NaN3,95% H2O, 5% D2O | 95% H2O/5% D2O | 10 mM phosphate | 6.6 | ambient | 310 | |
| 3 | 3D_15N-separated_NOESY | 1.5-1.8 mM rat OMP, 10mM phosphate buffer, 0.1 mM EDTA, 0.3 mM NaN3,95% H2O, 5% D2O | 95% H2O/5% D2O | 10 mM phosphate | 6.6 | ambient | 310 | |
| 4 | 2D IPAP-HSQC | 0.5 mM rat OMP, 10 mM phosphate buffer, 0.1 mM EDTA, 0.3 mM NaN3, 90% H2O, 10% D2O | 90% H2O/10% D2O | 10 mM phosphate | 6.6 | ambient | 310 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DMX | 600 |
| 2 | Bruker | DRX | 800 |
| 3 | Bruker | AVANCE | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| distance geometry simulated annealing | The structure is based on a total of 1764 restraints, of which 1343 are NOE-derived, 124 are H-bonds, 217 are dihedral angles, and 80 are residual dipolar coupling values | XPLOR-NIH |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (closest to the average) |
| Additional NMR Experimental Information | |
|---|---|
| Details | This structure was determined using standard 3D and 4D homonuclear techniques, along with residual dipolar coupling experiments (IPAP-HSQC) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | XPLOR-NIH | 2.9.3 | |
| 2 | processing | NMRPipe | 1.0 | |
| 3 | refinement | XPLOR-NIH | 2.9.3 | |














