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Crystal structure of a hypothetical protein TT1823 from Thermus thermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 293 22% PEG 3350, 0.1M TrisCl pH 7.6, 0.2M NaF, VAPOR DIFFUSION, HANGING DROP, temperature 293K 2 VAPOR DIFFUSION, HANGING DROP 7.6 293 18% PEG 3350, 0.1M TrisCl pH 7.6, 0.2M NaF, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.234 α = 90 b = 55.964 β = 90 c = 74.937 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2004-11-05 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 2005-04-11 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 1 SPring-8 BL26B1 2 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.97908, 0.97971, 0.98359 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.64 50 99.8 11711 11711 18.69
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.64 1.7 99.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR, MAD THROUGHOUT 1.64 25.46 11711 11156 555 99.8 0.18595 0.18595 0.18455 0.1866 0.21259 0.1859 RANDOM 21.153
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.39 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.698 r_scangle_it 4.458 r_scbond_it 2.79 r_mcangle_it 1.833 r_angle_refined_deg 1.587 r_mcbond_it 1.022 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.216 r_xyhbond_nbd_refined 0.169 r_symmetry_hbond_refined 0.133
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.698 r_scangle_it 4.458 r_scbond_it 2.79 r_mcangle_it 1.833 r_angle_refined_deg 1.587 r_mcbond_it 1.022 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.216 r_xyhbond_nbd_refined 0.169 r_symmetry_hbond_refined 0.133 r_chiral_restr 0.118 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 663 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing MOLREP phasing