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Low Resolution Structure of Response Regulator StyR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.3 277 PEG 4000, MgCl2, pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.3 44.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.66 α = 90 b = 36.546 β = 100.32 c = 75.12 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2003-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 0.8416 EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.91 25.3 96.77 5059 4795
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.91 2.95 47.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.91 25.3 4795 4652 228 96.77 0.26871 0.26871 0.26473 0.2636 0.35232 0.3515 RANDOM 44.576
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 1.64 1.41 -1.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.1 r_dihedral_angle_3_deg 21.782 r_dihedral_angle_4_deg 16.412 r_dihedral_angle_1_deg 6.37 r_scangle_it 2.031 r_angle_refined_deg 1.41 r_mcangle_it 1.239 r_scbond_it 1.179 r_mcbond_it 0.672 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.1 r_dihedral_angle_3_deg 21.782 r_dihedral_angle_4_deg 16.412 r_dihedral_angle_1_deg 6.37 r_scangle_it 2.031 r_angle_refined_deg 1.41 r_mcangle_it 1.239 r_scbond_it 1.179 r_mcbond_it 0.672 r_nbtor_refined 0.318 r_nbd_refined 0.245 r_symmetry_vdw_refined 0.242 r_symmetry_hbond_refined 0.219 r_xyhbond_nbd_refined 0.146 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1557 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing