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Structure of Protein of Unknown Function PA5198 from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 294 0.2 M potassium/sodium tartarate, 20% PEG 3350, pH 7.5, temperature 294K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.2 43.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.678 α = 90 b = 79.803 β = 104.01 c = 70.832 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97918 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 34.5 81.3 0.028 52.3 4.3 233413 189940
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.12 15 0.301 3.38 1.7 1740
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.1 34.5 189926 189926 4652 81.38 0.09921 0.09921 0.09866 0.1032 0.12082 0.1246 RANDOM 9.818
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.03 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.033 r_dihedral_angle_4_deg 16.414 r_dihedral_angle_3_deg 12.349 r_sphericity_free 11.276 r_dihedral_angle_1_deg 6.02 r_scangle_it 5.245 r_sphericity_bonded 4.3 r_scbond_it 3.643 r_mcangle_it 2.576 r_angle_refined_deg 1.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.033 r_dihedral_angle_4_deg 16.414 r_dihedral_angle_3_deg 12.349 r_sphericity_free 11.276 r_dihedral_angle_1_deg 6.02 r_scangle_it 5.245 r_sphericity_bonded 4.3 r_scbond_it 3.643 r_mcangle_it 2.576 r_angle_refined_deg 1.96 r_mcbond_it 1.71 r_rigid_bond_restr 1.555 r_angle_other_deg 1.07 r_mcbond_other 0.746 r_symmetry_vdw_other 0.331 r_symmetry_vdw_refined 0.284 r_nbd_refined 0.278 r_symmetry_hbond_refined 0.27 r_xyhbond_nbd_refined 0.238 r_nbd_other 0.231 r_xyhbond_nbd_other 0.208 r_nbtor_refined 0.182 r_metal_ion_refined 0.146 r_chiral_restr 0.122 r_nbtor_other 0.093 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4651 Nucleic Acid Atoms Solvent Atoms 1035 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing