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Parkia platycephala seed lectin in complex with 5-bromo-4-chloro-3-indolyl-a-D-mannose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 2.0M ammonium dihydrogen phosphate, 0.1M Tris-hydrochloride, 3mM, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.3 61.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.239 α = 90 b = 114.177 β = 119.88 c = 80.304 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-09-23 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM16 0.91995, 0.91932, 0.92191 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 69.673 100 0.048 0.04 15.3 5.8 43436 43436 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.64 100 0.17 0.138 2.3 5.8 6288
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 30 2 43403 39474 3929 99.99 0.2117 0.2117 0.2085 0.2117 0.24387 0.2395 RANDOM 25.301
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.43 0.88 -0.07 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.847 r_dihedral_angle_4_deg 18.92 r_dihedral_angle_3_deg 18.694 r_dihedral_angle_1_deg 7.273 r_scangle_it 3.793 r_angle_refined_deg 3.16 r_scbond_it 2.541 r_mcangle_it 1.915 r_mcbond_it 1.074 r_nbtor_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.847 r_dihedral_angle_4_deg 18.92 r_dihedral_angle_3_deg 18.694 r_dihedral_angle_1_deg 7.273 r_scangle_it 3.793 r_angle_refined_deg 3.16 r_scbond_it 2.541 r_mcangle_it 1.915 r_mcbond_it 1.074 r_nbtor_refined 0.32 r_symmetry_hbond_refined 0.294 r_nbd_refined 0.209 r_xyhbond_nbd_refined 0.145 r_symmetry_vdw_refined 0.142 r_chiral_restr 0.1 r_bond_refined_d 0.017 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6668 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms 138
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SOLVE phasing