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CRYSTAL STRUCTURE OF a GDSL-like lipase (ALR1529) FROM NOSTOC SP. PCC 7120 AT 2.02 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 277 10% NP_Isopropanol, 0.06M HEPES, 0.04M HEPES_Na, 12% PEG 4000, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.3 46.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.504 α = 90 b = 69.806 β = 90 c = 211.028 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 KOHZU: Double Crystal Si(111) 2003-08-31 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9787, 1.0332,0.9784 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 49.55 98.95 0.074 26.76 9.6 62663 31.55
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.02 2.09 95.27 0.348 4.9 7.85 5908
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.02 49.55 59429 3162 98.79 0.1567 0.15466 0.166 0.19469 0.1994 RANDOM 22.54
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 2.08 -1.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.856 r_dihedral_angle_4_deg 14.518 r_dihedral_angle_3_deg 12.678 r_dihedral_angle_1_deg 6.09 r_scangle_it 3.309 r_scbond_it 2.277 r_angle_refined_deg 1.469 r_mcangle_it 1.419 r_mcbond_it 1.047 r_angle_other_deg 0.867
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.856 r_dihedral_angle_4_deg 14.518 r_dihedral_angle_3_deg 12.678 r_dihedral_angle_1_deg 6.09 r_scangle_it 3.309 r_scbond_it 2.277 r_angle_refined_deg 1.469 r_mcangle_it 1.419 r_mcbond_it 1.047 r_angle_other_deg 0.867 r_mcbond_other 0.234 r_symmetry_vdw_other 0.231 r_nbd_refined 0.219 r_nbd_other 0.194 r_xyhbond_nbd_other 0.194 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.154 r_symmetry_vdw_refined 0.152 r_chiral_restr 0.086 r_nbtor_other 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6401 Nucleic Acid Atoms Solvent Atoms 819 Heterogen Atoms 36
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXD phasing autoSHARP phasing REFMAC refinement