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Crystal structure of fragment of mouse ubiquitin-activating enzyme
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294.15 2mM TCEP, 1.8M ammonium sulfate, 30% glycerol, 5mM Tris, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294.15K
Crystal Properties Matthews coefficient Solvent content 4.7 73.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 216.123 α = 90 b = 216.123 β = 90 c = 196.092 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MONOCHROMATIC 2004-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 20 98.6 0.071 0.071 5.4 43074 43074 87.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.84 92.1 0.23 0.23 3.5 1.7 3116
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD combine with SIR THROUGHOUT 2.8 10 41877 41877 2109 99 0.277 0.277 0.2657 0.308 0.2927 RANDOM 76.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.91 2.27 -6.91 13.82
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.9 c_scangle_it 7.74 c_mcangle_it 6.21 c_scbond_it 6.04 c_mcbond_it 3.97 c_improper_angle_d 1.8 c_angle_deg 1.4 c_bond_d 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6090 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 54
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction SCALEPACK data scaling MLPHARE phasing SHELXD phasing SHELXE model building SIGMAA phasing DM phasing