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Structure of Conserved Protein of Unknown Function from Enterococcus faecalis V583
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 298 2.0 ammonium sulfate, phosphate-citrate buffer, pH 4.2, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.99 38.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.797 α = 90 b = 69.236 β = 90 c = 82.538 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2005-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9795 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.297 43 97.1 0.084 25.27 4.5 39917 38760 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.3 43.44 38855 36904 1951 97.41 0.15695 0.15695 0.15537 0.1478 0.18688 0.1811 RANDOM 17.434
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.68 0.67 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.461 r_dihedral_angle_3_deg 14.018 r_dihedral_angle_4_deg 10.452 r_dihedral_angle_1_deg 7.337 r_scangle_it 3.143 r_scbond_it 2.318 r_mcangle_it 1.433 r_angle_refined_deg 1.25 r_mcbond_it 0.943 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.461 r_dihedral_angle_3_deg 14.018 r_dihedral_angle_4_deg 10.452 r_dihedral_angle_1_deg 7.337 r_scangle_it 3.143 r_scbond_it 2.318 r_mcangle_it 1.433 r_angle_refined_deg 1.25 r_mcbond_it 0.943 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.233 r_symmetry_vdw_refined 0.23 r_nbd_refined 0.203 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.098 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1390 Nucleic Acid Atoms Solvent Atoms 265 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing O model building Coot model building CCP4 phasing