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Structure of Homeodomain-like Protein of Unknown Function S4005 from Shigella flexneri
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 0.1 M Bis-Tris, 2 M ammonium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2 37.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.476 α = 90 b = 40.479 β = 93.78 c = 48.333 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2005-03-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97934 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 40 86.5 0.04 39.2 4.1 17111 17111
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.48 26.5 0.33 2.14 1.6 291
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 1.45 40 17111 17111 1739 86.5 0.1643 0.1643 0.1617 0.1817 0.2079 0.188 RANDOM 22.941
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.62 -0.18 0.57 -1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.405 r_dihedral_angle_3_deg 14.39 r_dihedral_angle_4_deg 14.281 r_sphericity_free 5.69 r_scangle_it 4.393 r_dihedral_angle_1_deg 4.03 r_sphericity_bonded 3.849 r_scbond_it 3.084 r_mcangle_it 2.166 r_rigid_bond_restr 1.958
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.405 r_dihedral_angle_3_deg 14.39 r_dihedral_angle_4_deg 14.281 r_sphericity_free 5.69 r_scangle_it 4.393 r_dihedral_angle_1_deg 4.03 r_sphericity_bonded 3.849 r_scbond_it 3.084 r_mcangle_it 2.166 r_rigid_bond_restr 1.958 r_mcbond_it 1.44 r_angle_refined_deg 1.427 r_nbtor_refined 0.3 r_nbd_refined 0.225 r_symmetry_vdw_refined 0.19 r_symmetry_hbond_refined 0.172 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.098 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 939 Nucleic Acid Atoms Solvent Atoms 156 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing