1Z64
NMR Solution Structure of Pleurocidin in DPC Micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2mM peptide U-15; 50mM phosphate buffer | 90/10 H2O/D2O, 140mM DPC | 0mM NaCl | 7.0 | atmospheric atm | 293 | |
2 | 2D TOCSY | 2mM peptide U-15; 50mM phosphate buffer | 90/10 H2O/D2O, 140mM DPC | 0mM NaCl | 7.0 | atmospheric atm | 293 | |
3 | 3D_15N-separated_NOESY | 2mM peptide U-15; 50mM phosphate buffer | 90/10 H2O/D2O, 140mM DPC | 0mM NaCl | 7.0 | atmospheric atm | 293 | |
4 | DOSY | 2mM peptide U-15; 50mM phosphate buffer | 90/10 H2O/D2O, 140mM DPC | 0mM NaCl | 7.0 | atmospheric atm | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry; simulated annealing; molecular dynamics | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 11 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | Structure was determined using 2D and 3D hetronuclear techniques |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | XwinNMR | 2.6 | Bruker |
2 | data analysis | Sparky | 3.105 | Donald Kneller |
3 | structure solution | X-PLOR | 3.1 | Brunger |
4 | refinement | X-PLOR | 3.1 | Brunger |