1Z3Y

Structure of Gun4-1 from Thermosynechococcus elongatus


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP27720% PEG 3350, 0.2 M NH3Cl, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.4149.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.307α = 90
b = 40.668β = 115.63
c = 61.861γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayIMAGE PLATERIGAKU RAXIS IV2004-04-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODE1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7502850128501
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.7680

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTgun41.75027004146797.910.182040.180640.20772RANDOM19.883
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.220.16-0.110.47
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.43
r_dihedral_angle_4_deg15.963
r_dihedral_angle_3_deg11.737
r_dihedral_angle_1_deg5.064
r_scangle_it2.08
r_scbond_it1.471
r_angle_refined_deg1.02
r_mcangle_it0.922
r_mcbond_it0.818
r_angle_other_deg0.786
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.43
r_dihedral_angle_4_deg15.963
r_dihedral_angle_3_deg11.737
r_dihedral_angle_1_deg5.064
r_scangle_it2.08
r_scbond_it1.471
r_angle_refined_deg1.02
r_mcangle_it0.922
r_mcbond_it0.818
r_angle_other_deg0.786
r_symmetry_vdw_other0.214
r_nbd_refined0.212
r_nbtor_refined0.182
r_nbd_other0.172
r_symmetry_vdw_refined0.163
r_xyhbond_nbd_refined0.119
r_mcbond_other0.107
r_symmetry_hbond_refined0.097
r_nbtor_other0.081
r_chiral_restr0.064
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1925
Nucleic Acid Atoms
Solvent Atoms280
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling