1Z3X

Structure of Gun4 from Thermosynechococcus elongatus


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP27720% PEG 3350, 0.2 M NH3Cl, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.550

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.295α = 90
b = 40.672β = 115.4
c = 62.372γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42004-02-04MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS0.976, 0.9802, 0.9660NSLS

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5500.0684248442482
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.51.5391000.467

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.55040305214199.680.180420.17890.20856RANDOM16.161
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.5-0.07-0.320.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.785
r_dihedral_angle_4_deg16.165
r_dihedral_angle_3_deg12.096
r_dihedral_angle_1_deg5.4
r_scangle_it2.498
r_scbond_it1.755
r_mcangle_it1.181
r_angle_refined_deg1.117
r_mcbond_it0.982
r_angle_other_deg0.825
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.785
r_dihedral_angle_4_deg16.165
r_dihedral_angle_3_deg12.096
r_dihedral_angle_1_deg5.4
r_scangle_it2.498
r_scbond_it1.755
r_mcangle_it1.181
r_angle_refined_deg1.117
r_mcbond_it0.982
r_angle_other_deg0.825
r_symmetry_vdw_other0.252
r_nbd_refined0.215
r_nbtor_refined0.182
r_nbd_other0.175
r_symmetry_vdw_refined0.158
r_mcbond_other0.156
r_symmetry_hbond_refined0.155
r_xyhbond_nbd_refined0.151
r_nbtor_other0.082
r_chiral_restr0.069
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1938
Nucleic Acid Atoms
Solvent Atoms432
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing