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the glycogen-binding domain of the AMP-activated protein kinase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 299 PEG, monomethyl ether 5000, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 299K
Crystal Properties Matthews coefficient Solvent content 2.3 51.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.75 α = 71.9 b = 45.25 β = 69.7 c = 50.6 γ = 65.4
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.9791 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 24 95.9 0.049 2.4 23738 23738
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.48 1.51 91.4 91.4 0.332 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.49 23.27 23738 23738 2583 96.16 0.18534 0.184 0.18388 0.1811 0.21256 0.2105 RANDOM 22.137
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 0.31 -1.06 -0.38 -0.3 1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.454 r_dihedral_angle_4_deg 22.55 r_dihedral_angle_3_deg 13.345 r_dihedral_angle_1_deg 6.83 r_mcangle_it 2.997 r_scangle_it 2.285 r_mcbond_it 2.041 r_angle_refined_deg 1.666 r_scbond_it 1.652 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.454 r_dihedral_angle_4_deg 22.55 r_dihedral_angle_3_deg 13.345 r_dihedral_angle_1_deg 6.83 r_mcangle_it 2.997 r_scangle_it 2.285 r_mcbond_it 2.041 r_angle_refined_deg 1.666 r_scbond_it 1.652 r_nbtor_refined 0.318 r_nbd_refined 0.228 r_chiral_restr 0.205 r_symmetry_vdw_refined 0.171 r_symmetry_hbond_refined 0.169 r_xyhbond_nbd_refined 0.151 r_gen_planes_refined 0.042 r_bond_refined_d 0.015
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1992 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 231
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing CNS refinement REFMAC refinement PDB_EXTRACT data extraction DM phasing