Experiment: 1Z0M

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7	299	PEG, monomethyl ether 5000, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 299K

Crystal Properties
Matthews coefficient	Solvent content
2.3	50.93

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 43.735	α = 70.72
b = 44.891	β = 68.77
c = 50.335	γ = 65.79

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 4		2001-07-04	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 14-BM-C	1.0	APS	14-BM-C

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.9	30	95.8	0.039			23738	23738

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.9	1.97	81.6	81.6	0.181

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SIR+NCS averaging	THROUGHOUT	1.91	30	23738	23738	1213	95.63	0.195	0.227	0.19059	0.24268	RANDOM	34.75

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.14	0.94	-1.29	-0.29	-2.13	3.01

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.902
r_dihedral_angle_4_deg	19.741
r_dihedral_angle_3_deg	16.499
r_dihedral_angle_1_deg	7.818
r_scangle_it	4.195
r_mcangle_it	4.132
r_scbond_it	3.089
r_mcbond_it	2.888
r_angle_refined_deg	1.739
r_nbtor_refined	0.32

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.902
r_dihedral_angle_4_deg	19.741
r_dihedral_angle_3_deg	16.499
r_dihedral_angle_1_deg	7.818
r_scangle_it	4.195
r_mcangle_it	4.132
r_scbond_it	3.089
r_mcbond_it	2.888
r_angle_refined_deg	1.739
r_nbtor_refined	0.32
r_symmetry_hbond_refined	0.241
r_symmetry_vdw_refined	0.234
r_nbd_refined	0.211
r_chiral_restr	0.201
r_xyhbond_nbd_refined	0.146
r_gen_planes_refined	0.036
r_bond_refined_d	0.015

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2001
Nucleic Acid Atoms
Solvent Atoms	200
Heterogen Atoms	231

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MLPHARE	phasing
CNS	refinement
REFMAC	refinement
PDB_EXTRACT	data extraction
DM	phasing

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.