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Solution structure of the C-terminal domain of ERCC1 complexed with the C-terminal domain of XPF
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D NOESY-(13C,1H)-HSQC 1.5mM ERCC1-XPF U-15N,13C; 50mM phosphate buffer NA: 92% H2O, 8% D2O 92% H2O, 8% D2O 50mM phosphate, 100mM NaCl 7.0 1 atm 295.5 2 3D NOESY-(15N,1H)-HSQC 1.5mM ERCC1-XPF U-15N,13C; 50mM phosphate buffer NA: 92% H2O, 8% D2O 92% H2O, 8% D2O 50mM phosphate, 100mM NaCl 7.0 1 atm 295.5 3 3D (13C)-HMQC-NOESY-(13C,1H)-HSQC 1.5mM ERCC1-XPF U-15N,13C; 50mM phosphate buffer NA: 92% H2O, 8% D2O 92% H2O, 8% D2O 50mM phosphate, 100mM NaCl 7.0 1 atm 295.5 4 3D (13C)-HMQC-NOESY-(15N 1H)-HSQC 1.5mM ERCC1-XPF U-15N,13C; 50mM phosphate buffer NA: 92% H2O, 8% D2O 92% H2O, 8% D2O 50mM phosphate, 100mM NaCl 7.0 1 atm 295.5 5 2D NOESY 1mM ERCC1-XPF U-15N; 50mM phosphate buffer NA: 92% H2O, 8% D2O 92% H2O, 8% D2O 50mM phosphate, 100mM NaCl 7.0 1 atm 295.5 6 2D NOESY 15N FILTERED 1mM ERCC1-XPF U-15N; 50mM phosphate buffer NA: 92% H2O, 8% D2O 92% H2O, 8% D2O 50mM phosphate, 100mM NaCl 7.0 1 atm 295.5
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700 2 Bruker AVANCE 900
NMR Refinement Method Details Software water refinment in CNS 4547 NOE-derived
distance restraints, 197 TALOS based dihedral angle restraints and distance restraints for 52 hydrogen bonds XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 3.5 2 processing NMRPipe 2.3 Delaglio 3 data analysis Sparky 3.110 Goddard and Kneller 4 structure solution CYANA 2.0 Guntert 5 refinement CNS 1.1 Brunger