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Crystal Structure of Kinase Pim1 in complex with AMPPNP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 Na Acetate, Imidazole, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.8 67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.566 α = 90 b = 95.566 β = 90 c = 80.862 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 82.76 99.9 0.057 0.057 11.4 4.2 28420 1.5 1.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 100 100 0.715 0.715 1 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 81.65 1.5 28435 26945 1435 99.81 0.183 0.181 0.216 0.2205 RANDOM 27.228
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.24 0.62 1.24 -1.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.178 r_scangle_it 3.118 r_scbond_it 1.899 r_angle_refined_deg 1.568 r_mcangle_it 1.362 r_angle_other_deg 0.735 r_mcbond_it 0.723 r_symmetry_vdw_other 0.346 r_symmetry_vdw_refined 0.338 r_symmetry_hbond_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.178 r_scangle_it 3.118 r_scbond_it 1.899 r_angle_refined_deg 1.568 r_mcangle_it 1.362 r_angle_other_deg 0.735 r_mcbond_it 0.723 r_symmetry_vdw_other 0.346 r_symmetry_vdw_refined 0.338 r_symmetry_hbond_refined 0.299 r_nbd_other 0.287 r_nbd_refined 0.26 r_xyhbond_nbd_refined 0.177 r_chiral_restr 0.094 r_nbtor_other 0.085 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2230 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 31
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling MOLREP phasing