1YVC
Solution structure of the conserved protein from the gene locus MMP0076 of Methanococcus maripaludis. Northeast Structural Genomics target MrR5.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 1.2mM MrR5 U-13C,15N, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.5 | 5% D2O/95% H2O | 100 mM NaCl | 4.5 | atmospheric atm | 293 | |
2 | 3D_15N-separated_NOESY | 1.2mM MrR5 U-13C,15N, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.5 | 5% D2O/95% H2O | 100 mM NaCl | 4.5 | atmospheric atm | 293 | |
3 | HcCH-COSY, | 1.2mM MrR5 U-13C,15N, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.5 | 5% D2O/95% H2O | 100 mM NaCl | 4.5 | atmospheric atm | 293 | |
4 | Hi-Res CH-HSQC(st. Me assign), HNHA, HetNOE | 1.1mM MrR5 U-15N, 5%13C, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.5 | 5% D2O/95% H2O | 100 mM NaCl | 4.5 | atmospheric atm | 293 | |
5 | TR backbone, H,C_TOCSYs, NH-HSQC | 1.2mM MrR5 U-13C,15N, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.5 | 5% D2O/95% H2O | 100 mM NaCl | 4.5 | atmospheric atm | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Bruker | AVANCE | 500 |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 56 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest target function) |
Additional NMR Experimental Information | |
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Details | CS assign: AutoAssign (bb), HcCH-cosy + TOCSYs (sc), AutoStructure (noe), Hyper (Dihe), Dyana,Xplor,CNS(imp. H2O) (sim. annealing) AutoQF quality factor calc. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1 | Varian |
2 | collection | XwinNMR | 3.5 | Bruker Biospin |
3 | processing | NMRPipe | 2.1 | Delaglio (NIH) |
4 | data analysis | Sparky | 3.91 | Goddard (UCSF) |
5 | data analysis | AutoAssign | 1.15.1 | Zimmerman (Rutgers) |
6 | structure solution | AutoStructure | 2.1.0 | Huang (Rutgers) |
7 | refinement | AutoStructure | 2.1.0 | Huang (Rutgers) |