1YOD

Crystal structure of a water soluble analog of phospholamban


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.62981,6 hexanediol, sodium citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
2.142

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.996α = 90
b = 46.996β = 90
c = 120.136γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42003-03-03MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.10.9765, 0.9766, 0.9643ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.83099.80.07313.1187887765825.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.851000.432.818625

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.8207887730453899.720.211760.211760.208670.25724RANDOM25.5
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.460.230.46-0.7
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it7.49
r_scbond_it4.341
r_sphericity_free4.101
r_dihedral_angle_1_deg3.826
r_sphericity_bonded2.783
r_mcangle_it2.708
r_rigid_bond_restr2.504
r_angle_refined_deg1.663
r_mcbond_it1.536
r_angle_other_deg0.911
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it7.49
r_scbond_it4.341
r_sphericity_free4.101
r_dihedral_angle_1_deg3.826
r_sphericity_bonded2.783
r_mcangle_it2.708
r_rigid_bond_restr2.504
r_angle_refined_deg1.663
r_mcbond_it1.536
r_angle_other_deg0.911
r_symmetry_hbond_refined0.309
r_symmetry_vdw_other0.272
r_nbd_refined0.263
r_nbd_other0.255
r_xyhbond_nbd_refined0.255
r_symmetry_vdw_refined0.203
r_nbtor_other0.089
r_chiral_restr0.084
r_bond_refined_d0.034
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms489
Nucleic Acid Atoms
Solvent Atoms62
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing