1YNX

Solution structure of DNA binding domain A (DBD-A) of S.cerevisiae Replication Protein A (RPA)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_13C-separated_NOESY1mM scRPA DBD A U-15N, 13C; 20mM Sodium Phosphate, 100mM NaCl, 2mM DTT, pH 7.0; 90% H2O, 10% D2O90% H2O/10% D2O100mM NaCl7.0ambient300
23D_15N-separated_NOESY1mM scRPA DBD A U-15N; 20mM Sodium Phosphate, 100mM NaCl, 2mM DTT, pH 7.0; 90% H2O, 10% D2O90% H2O/10% D2O100mM NaCl7.0ambient300
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
Torsional Angle Dynamics with Internal Variable ModuleThe structure calculations were performed using 1138 interproton distance restraints and 161 dihedral angle restraints.NMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number22
Representative Model12 (lowest energy)
Additional NMR Experimental Information
DetailsThe chemical shift assignments were done with triple-resonance experiments. Restraints were get from 3D 13C, 15N NOESY data.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipelatestDelaglio et al.
2collectionVNMRlatestVarian, Inc.
3structure solutionX-PLORNIH 2.9.6Clore et al.,
4refinementX-PLORNIH 2.9.6Clore et al.,