X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.5293(NH4)2SO4, Li2SO4, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.448.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.122α = 90
b = 87.543β = 90
c = 105.434γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2004-06-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA0.97934SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.338.7199.40.0850.0859.385.4169631169631-320.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.4990.5060.5063.54.333318

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONisomorphousTHROUGHOUT1.367.42169629161130849999.360.153390.151720.18534RANDOM20.057
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.150.62-0.46
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.541
r_dihedral_angle_3_deg12.533
r_dihedral_angle_4_deg12.134
r_sphericity_free8.9
r_scangle_it6.622
r_sphericity_bonded6.147
r_dihedral_angle_1_deg5.629
r_scbond_it5.072
r_mcangle_it3.534
r_rigid_bond_restr3.312
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.541
r_dihedral_angle_3_deg12.533
r_dihedral_angle_4_deg12.134
r_sphericity_free8.9
r_scangle_it6.622
r_sphericity_bonded6.147
r_dihedral_angle_1_deg5.629
r_scbond_it5.072
r_mcangle_it3.534
r_rigid_bond_restr3.312
r_mcbond_it2.458
r_angle_refined_deg1.715
r_nbtor_refined0.313
r_nbd_refined0.225
r_symmetry_hbond_refined0.212
r_symmetry_vdw_refined0.208
r_xyhbond_nbd_refined0.189
r_chiral_restr0.103
r_bond_refined_d0.015
r_gen_planes_refined0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4718
Nucleic Acid Atoms
Solvent Atoms683
Heterogen Atoms145

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
XDSdata scaling