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aldo-keto reductase AKR11C1 from Bacillus halodurans (apo form)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 (NH4)2SO4, Li2SO4, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.5 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.669 α = 90 b = 86.566 β = 90 c = 105.427 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-02-04 M SINGLE WAVELENGTH 2 1 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.97784, 1.3783 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 38.71 94.4 0.087 0.087 10 5.7 178042 178042 -3 19.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.3 83.4 0.506 0.506 2.7 2.8 17279
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.25 67.42 178030 169110 8920 94.43 0.17211 0.17037 0.1695 0.20584 0.2047 RANDOM 19.618
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 1.04 -0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.234 r_dihedral_angle_3_deg 12.702 r_dihedral_angle_4_deg 12.238 r_sphericity_free 9.146 r_scangle_it 6.794 r_sphericity_bonded 6.53 r_dihedral_angle_1_deg 5.71 r_scbond_it 5.065 r_mcangle_it 3.723 r_rigid_bond_restr 3.141
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.234 r_dihedral_angle_3_deg 12.702 r_dihedral_angle_4_deg 12.238 r_sphericity_free 9.146 r_scangle_it 6.794 r_sphericity_bonded 6.53 r_dihedral_angle_1_deg 5.71 r_scbond_it 5.065 r_mcangle_it 3.723 r_rigid_bond_restr 3.141 r_mcbond_it 2.729 r_angle_refined_deg 1.691 r_nbtor_refined 0.316 r_nbd_refined 0.228 r_symmetry_vdw_refined 0.211 r_xyhbond_nbd_refined 0.166 r_symmetry_hbond_refined 0.119 r_chiral_restr 0.105 r_bond_refined_d 0.016 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4661 Nucleic Acid Atoms Solvent Atoms 586 Heterogen Atoms 90
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection XDS data scaling SHARP phasing