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anti-HCV Fab 19D9D6 complexed with protein L (PpL) mutant A66W
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MHH PDB ENTRY 1MHH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.1 293 9% PEG5K, 100mM Na cacodylate, pH 5.1, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.5 51.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.143 α = 90 b = 111.469 β = 90 c = 148.698 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.720169 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 88 97.8 0.058 15 11 39989 39109 79.237
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.66 100 0.489 4 11 2806
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MHH 2.6 87.71 39989 37096 1957 97.53 0.2284 0.2284 0.22431 0.2297 0.30228 0.3014 RANDOM 64.086
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 -1.19 0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 11.645 r_scangle_it 6.629 r_mcangle_it 5.482 r_scbond_it 4.514 r_angle_refined_deg 4.344 r_mcbond_it 3.574 r_angle_other_deg 2.155 r_chiral_restr 0.446 r_symmetry_vdw_other 0.368 r_nbd_other 0.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 11.645 r_scangle_it 6.629 r_mcangle_it 5.482 r_scbond_it 4.514 r_angle_refined_deg 4.344 r_mcbond_it 3.574 r_angle_other_deg 2.155 r_chiral_restr 0.446 r_symmetry_vdw_other 0.368 r_nbd_other 0.321 r_nbd_refined 0.311 r_symmetry_vdw_refined 0.271 r_symmetry_hbond_refined 0.266 r_xyhbond_nbd_refined 0.254 r_nbtor_other 0.15 r_bond_refined_d 0.065 r_gen_planes_refined 0.022 r_gen_planes_other 0.008 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7768 Nucleic Acid Atoms Solvent Atoms 116 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing