☰ Navigation Tabs
Crystal structure of human CD38 extracellular domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 297 MES, PEG4000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.4 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.839 α = 108.27 b = 51.491 β = 90.47 c = 66.439 γ = 97.29
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 0.916 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 97.9 41065 40203 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 94.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.91 10 39418 37426 1992 98.06 0.19174 0.19174 0.18849 0.1886 0.25336 0.2517 RANDOM 28.562
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.17 0.66 1.21 1.15 2.56 2.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.334 r_scangle_it 6.297 r_scbond_it 4.2 r_mcangle_it 2.659 r_angle_refined_deg 2.264 r_mcbond_it 1.539 r_symmetry_vdw_refined 0.409 r_nbd_refined 0.263 r_xyhbond_nbd_refined 0.206 r_symmetry_hbond_refined 0.191
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.334 r_scangle_it 6.297 r_scbond_it 4.2 r_mcangle_it 2.659 r_angle_refined_deg 2.264 r_mcbond_it 1.539 r_symmetry_vdw_refined 0.409 r_nbd_refined 0.263 r_xyhbond_nbd_refined 0.206 r_symmetry_hbond_refined 0.191 r_chiral_restr 0.174 r_bond_refined_d 0.029 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3986 Nucleic Acid Atoms Solvent Atoms 324 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing