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Solution Structure of the ScYLV P1-P2 Frameshifting Pseudoknot, Regularized Average Structure
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 2mM ScYLV pseudoknot, 100mM KCl, 5mM MgCl2, pH6.0 90% H2O/10% D2O 100mM KCl; 5mM MgCl2 6.0 ambient 283 2 2D NOESY 2mM ScYLV pseudoknot, 100mM KCl, 5mM MgCl2, pH6.0 100% D2O 100mM KCl; 5mM MgCl2 6.0 ambient 298 3 3D_13C-separated_NOESY 2mM ScYLV pseudoknot, 100mM KCl, 5mM MgCl2, pH6.0 100% D2O 100mM KCl; 5mM MgCl2 6.0 ambient 298 4 CT-TROSY and CT-antiTROSY 2mM ScYLV pseudoknot, 100mM KCl, 5mM MgCl2, pH6.0, 12.5mg/ml PF1 phage 100% D2O 100mM KCl; 5mM MgCl2 6.0 ambient 298 5 J-modulated HSQC 2mM ScYLV pseudoknot, 100mM KCl, 5mM MgCl2, pH6.0, 12.5mg/ml PF1 phage 100% D2O 100mM KCl; 5mM MgCl2 6.0 ambient 298 6 2D TOCSY 2mM ScYLV pseudoknot, 100mM KCl, 5mM MgCl2, pH6.0 100% D2O 100mM KCl; 5mM MgCl2 6.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 500 2 Varian INOVA 600 3 Bruker AVANCE 900
NMR Refinement Method Details Software simulated annealing NMRPipe
NMR Ensemble Information Conformer Selection Criteria averaged structure Conformers Calculated Total Number 25 Conformers Submitted Total Number 1 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe 97.027.12.56 F. Delaglio, S. Grzesiek, G.W. Vuister, G. Zhu, J. Pfeifer and A. Bax 2 data analysis Sparky 3.110 T. D. Goddard and D. G. Kneller 3 structure solution X-PLOR-NIH 2.9.7 G.M. Clore , J.Kuszewski, C.D. Schwieters, and N.Tjandra 4 refinement X-PLOR-NIH 2.9.7 G.M. Clore , J.Kuszewski, C.D. Schwieters, and N.Tjandra