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Alcohol Dehydrogenase from Entamoeba histolotica in complex with cacodylate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 PEG 8000 14%w/v, 300 mM Mg Acetate, 200mM cacodylate at pH 6.5, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.77 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.891 α = 90 b = 234.139 β = 90 c = 96.241 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 0.056 74221
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 96.3 0.486
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.81 117.04 70422 3722 92.67 0.12885 0.12625 0.1536 0.17707 0.1961 RANDOM 23.091
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.79 2.16 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.612 r_dihedral_angle_4_deg 14.867 r_dihedral_angle_3_deg 13.441 r_dihedral_angle_1_deg 6.787 r_sphericity_free 6.689 r_scangle_it 6.108 r_scbond_it 4.731 r_mcangle_it 3.467 r_sphericity_bonded 2.916 r_mcbond_it 2.789
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.612 r_dihedral_angle_4_deg 14.867 r_dihedral_angle_3_deg 13.441 r_dihedral_angle_1_deg 6.787 r_sphericity_free 6.689 r_scangle_it 6.108 r_scbond_it 4.731 r_mcangle_it 3.467 r_sphericity_bonded 2.916 r_mcbond_it 2.789 r_rigid_bond_restr 2.212 r_angle_refined_deg 1.595 r_mcbond_other 1.226 r_angle_other_deg 0.868 r_symmetry_vdw_other 0.332 r_symmetry_hbond_refined 0.304 r_symmetry_vdw_refined 0.281 r_nbd_refined 0.218 r_xyhbond_nbd_refined 0.196 r_nbd_other 0.186 r_nbtor_refined 0.17 r_symmetry_metal_ion_refined 0.157 r_metal_ion_refined 0.15 r_chiral_restr 0.099 r_nbtor_other 0.085 r_xyhbond_nbd_other 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5418 Nucleic Acid Atoms Solvent Atoms 754 Heterogen Atoms 44
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction