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structure of insect cell (Baculovirus) expressed AVR4 (C122S)-biotin complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 2.0M ammonium sulfate,0.1M sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.07 69.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.963 α = 90 b = 80.963 β = 90 c = 140.698 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 40 99.5 0.046 5.5 51814 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 38.92 1 49130 2645 99.52 0.209 0.19332 0.19293 0.2005 0.20038 RANDOM 29.533
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.02 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.305 r_scangle_it 4.288 r_scbond_it 2.601 r_mcangle_it 1.999 r_angle_refined_deg 1.65 r_mcbond_it 1.065 r_angle_other_deg 0.92 r_chiral_restr 0.398 r_symmetry_vdw_other 0.277 r_nbd_other 0.255
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.305 r_scangle_it 4.288 r_scbond_it 2.601 r_mcangle_it 1.999 r_angle_refined_deg 1.65 r_mcbond_it 1.065 r_angle_other_deg 0.92 r_chiral_restr 0.398 r_symmetry_vdw_other 0.277 r_nbd_other 0.255 r_nbd_refined 0.19 r_symmetry_hbond_refined 0.169 r_xyhbond_nbd_refined 0.164 r_nbtor_other 0.086 r_symmetry_vdw_refined 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1894 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement DENZO data reduction CCP4 data scaling AMoRE phasing