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Catalytic Domain Of Human Phosphodiesterase 4B In Complex With 1-(2-chloro-phenyl)-3,5-dimethyl-1H-pyrazole-4-carboxylic acid ethyl ester
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10 277 ammonium sulfate and lithium sulfate, pH 10, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.46 50.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.541 α = 90 b = 94.178 β = 90 c = 106.819 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 70.71 99.45 0.072 7.3 4.6 33955 33955
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.462 100 0.878 1.4 4.6 2582
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 70.71 33955 33955 1779 99.45 0.24762 0.24762 0.24496 0.2452 0.29933 0.2951 RANDOM 33.214
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.13 0.56 5.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 2.583 r_scangle_it 1.748 r_angle_refined_deg 1.198 r_scbond_it 1.057 r_angle_other_deg 0.873 r_mcangle_it 0.663 r_mcbond_it 0.349 r_metal_ion_refined 0.225 r_symmetry_vdw_other 0.215 r_nbd_other 0.205
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 2.583 r_scangle_it 1.748 r_angle_refined_deg 1.198 r_scbond_it 1.057 r_angle_other_deg 0.873 r_mcangle_it 0.663 r_mcbond_it 0.349 r_metal_ion_refined 0.225 r_symmetry_vdw_other 0.215 r_nbd_other 0.205 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.167 r_xyhbond_nbd_refined 0.129 r_symmetry_hbond_refined 0.114 r_nbtor_other 0.094 r_chiral_restr 0.072 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5234 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection ELVES data scaling EPMR phasing