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human formylglycine generating enzyme
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other unpublished model of the FGE paralogue pFGE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 Tris/HCl, CaCl2, PEG4000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.956 α = 90 b = 110.014 β = 90 c = 43.474 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH osmic 2004-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5419
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 29.8 97 0.063 17.3 2.9 30898
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.78 72.2 0.264 1.6 2.3 2243
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT unpublished model of the FGE paralogue pFGE 1.73 29.8 29329 1495 97.05 0.1964 0.19412 0.2091 0.24232 0.2535 RANDOM 23.576
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.71 0.87 -1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.806 r_dihedral_angle_4_deg 17.326 r_dihedral_angle_3_deg 13.23 r_dihedral_angle_1_deg 6.781 r_scangle_it 2.211 r_scbond_it 1.523 r_angle_refined_deg 1.357 r_mcangle_it 1.095 r_angle_other_deg 0.924 r_mcbond_it 0.738
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.806 r_dihedral_angle_4_deg 17.326 r_dihedral_angle_3_deg 13.23 r_dihedral_angle_1_deg 6.781 r_scangle_it 2.211 r_scbond_it 1.523 r_angle_refined_deg 1.357 r_mcangle_it 1.095 r_angle_other_deg 0.924 r_mcbond_it 0.738 r_nbd_refined 0.205 r_nbd_other 0.198 r_nbtor_refined 0.184 r_symmetry_vdw_other 0.164 r_mcbond_other 0.152 r_xyhbond_nbd_refined 0.131 r_symmetry_hbond_refined 0.121 r_chiral_restr 0.095 r_metal_ion_refined 0.087 r_nbtor_other 0.086 r_symmetry_vdw_refined 0.013 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2165 Nucleic Acid Atoms Solvent Atoms 407 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing