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Drospohila thioredoxin, oxidized, P42212
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AUC PDB Entry 1AUC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.2 298 CdCl2, PEG400, pH 5.2, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.3 45.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.465 α = 90 b = 99.465 β = 90 c = 87.78 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH mirrors M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 86.8 0.042 17.2 5.3 22855 34.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.2 91.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry 1AUC 2.2 20 18759 1004 86.27 0.22605 0.22274 0.2313 0.28835 0.2401 RANDOM 21.178
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 -0.24 0.47
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.028 r_dihedral_angle_1_deg 4.784 r_mcangle_it 4.384 r_scbond_it 3.78 r_mcbond_it 3.313 r_angle_refined_deg 1.083 r_angle_other_deg 0.733 r_metal_ion_refined 0.292 r_nbd_refined 0.259 r_symmetry_vdw_refined 0.245
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.028 r_dihedral_angle_1_deg 4.784 r_mcangle_it 4.384 r_scbond_it 3.78 r_mcbond_it 3.313 r_angle_refined_deg 1.083 r_angle_other_deg 0.733 r_metal_ion_refined 0.292 r_nbd_refined 0.259 r_symmetry_vdw_refined 0.245 r_symmetry_vdw_other 0.23 r_nbd_other 0.226 r_xyhbond_nbd_refined 0.221 r_symmetry_hbond_refined 0.163 r_nbtor_other 0.082 r_chiral_restr 0.06 r_bond_refined_d 0.01 r_bond_other_d 0.004 r_gen_planes_refined 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3264 Nucleic Acid Atoms Solvent Atoms 218 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing