Experiment: 1XVJ

X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficient	Solvent content
1.984	38

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 30.719	α = 90
b = 56.988	β = 105.81
c = 56.493	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	173	IMAGE PLATE	RIGAKU RAXIS IV		2003-03-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU	1.54

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	24.54	92	0.066	0.066	25	3.4	15257	15257

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.8	1.86	90		0.224	0.224	9.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.8	24.54	15257	15257	780	99.45	0.19882	0.19882	0.19693	0.23582	RANDOM	17.697

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.07		-0.02	-0.28		0.19

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_1_deg	5.212
r_scangle_it	2.984
r_scbond_it	1.834
r_angle_refined_deg	1.16
r_mcangle_it	1.011
r_mcbond_it	0.531
r_nbd_refined	0.199
r_symmetry_vdw_refined	0.14
r_symmetry_hbond_refined	0.123
r_xyhbond_nbd_refined	0.108

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_1_deg	5.212
r_scangle_it	2.984
r_scbond_it	1.834
r_angle_refined_deg	1.16
r_mcangle_it	1.011
r_mcbond_it	0.531
r_nbd_refined	0.199
r_symmetry_vdw_refined	0.14
r_symmetry_hbond_refined	0.123
r_xyhbond_nbd_refined	0.108
r_chiral_restr	0.089
r_metal_ion_refined	0.083
r_bond_refined_d	0.01
r_gen_planes_refined	0.004

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1653
Nucleic Acid Atoms
Solvent Atoms	199
Heterogen Atoms	4

Software

Software
Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
CNS	phasing

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.