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Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D TOCSY 80 mM NaCl, 10 mM Sodium phosphates, 0.5 mM EDTA, pH5.9
10% D2O NMR 5.9 1 atm 303 2 2D NOESY 80 mM NaCl, 10 mM Sodium phosphates, 0.5 mM EDTA, pH5.9
10% D2O NMR 5.9 1 atm 303 3 DQF-COSY 80 mM NaCl, 10 mM Sodium phosphates, 0.5 mM EDTA, pH5.9
10% D2O NMR 5.9 1 atm 273 4 2D NOESY 80 mM NaCl, 10 mM Sodium phosphates, 0.5 mM EDTA, pH5.9
10% D2O NMR 5.9 1 atm 273
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 500 2 Varian INOVA 600
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 40 Conformers Submitted Total Number 33 Representative Model 17 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis Felix 2000 2 structure solution Discover 3 refinement Discover 4 structure solution Amber