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Crystal Structure of Cysteine-Binding Protein from Campylobacter jejuni at 2.0 A Resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WDN PDB ENTRY 1WDN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 PEG3350, NaCl, MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.3 46.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.863 α = 90 b = 88.787 β = 107.81 c = 72.11 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Sagitally focusing Ge(220) and a multilayer 2004-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.93400 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 78.8 0.07 14.7 2 30084 30084
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 60.9 0.529 1.9 1.9 1158
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1WDN 2 19.92 28444 28444 1518 100 0.18011 0.18011 0.17738 0.2221 0.2297 0.2654 RANDOM 32.135
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.85 -2.61 -1.35 -1.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.935 r_dihedral_angle_3_deg 14.512 r_dihedral_angle_4_deg 11.504 r_dihedral_angle_1_deg 6.374 r_scangle_it 1.958 r_angle_refined_deg 1.318 r_scbond_it 1.304 r_angle_other_deg 0.786 r_mcangle_it 0.696 r_mcbond_it 0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.935 r_dihedral_angle_3_deg 14.512 r_dihedral_angle_4_deg 11.504 r_dihedral_angle_1_deg 6.374 r_scangle_it 1.958 r_angle_refined_deg 1.318 r_scbond_it 1.304 r_angle_other_deg 0.786 r_mcangle_it 0.696 r_mcbond_it 0.55 r_symmetry_vdw_other 0.225 r_symmetry_vdw_refined 0.2 r_nbd_refined 0.198 r_symmetry_hbond_refined 0.196 r_nbtor_refined 0.175 r_nbd_other 0.173 r_xyhbond_nbd_refined 0.171 r_mcbond_other 0.119 r_nbtor_other 0.085 r_chiral_restr 0.078 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3944 Nucleic Acid Atoms Solvent Atoms 324 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling MOLREP phasing