1XRK

Crystal structure of a mutant bleomycin binding protein from Streptoalloteichus hindustanus displaying increased thermostability


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.6293ammonium sulfate, sodium acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.243.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.983α = 90
b = 66.617β = 117.43
c = 47.179γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMirrors2003-10-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.20.9083BESSY14.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.53094.40.04320.38774036444
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.51.5388.60.1893.91714

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1JIE1.53034580184094.150.175080.174030.19425RANDOM12.73
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.07-0.230.45-0.74
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.237
r_dihedral_angle_4_deg16.984
r_dihedral_angle_3_deg12.065
r_dihedral_angle_1_deg6.035
r_scangle_it2.818
r_scbond_it1.933
r_angle_refined_deg1.664
r_angle_other_deg1.432
r_mcangle_it1.328
r_mcbond_it0.936
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.237
r_dihedral_angle_4_deg16.984
r_dihedral_angle_3_deg12.065
r_dihedral_angle_1_deg6.035
r_scangle_it2.818
r_scbond_it1.933
r_angle_refined_deg1.664
r_angle_other_deg1.432
r_mcangle_it1.328
r_mcbond_it0.936
r_symmetry_vdw_other0.256
r_symmetry_vdw_refined0.237
r_nbd_other0.202
r_nbd_refined0.192
r_xyhbond_nbd_refined0.19
r_mcbond_other0.19
r_nbtor_refined0.184
r_symmetry_hbond_refined0.176
r_chiral_restr0.099
r_nbtor_other0.087
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1883
Nucleic Acid Atoms
Solvent Atoms288
Heterogen Atoms197

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing