Solution Structure of Northeast Structural Genomics Target Protein XcR50 from X. Campestris
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | GFT (4,3)D HNNCABCA | 0.77 mM protein, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES | 5% D2O, 95% H2O | 6.5 | ambient | 298 | ||
| 2 | GFT (4,3)D CABCA(CO)NHN | 0.77 mM protein, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES | 5% D2O, 95% H2O | 6.5 | ambient | 298 | ||
| 3 | GFT (4,3)D HABCAB(CO)NHN | 0.77 mM protein, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES | 5% D2O, 95% H2O | 6.5 | ambient | 298 | ||
| 4 | GFT (4,3)D HCCH | 0.77 mM protein, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES | 5% D2O, 95% H2O | 6.5 | ambient | 298 | ||
| 5 | Simultaneous Heteronuclear-resolved [1H, 1H]-NOESY | 0.77 mM protein, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES | 5% D2O, 95% H2O | 6.5 | ambient | 298 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| 2 | Varian | INOVA | 750 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing, molecular dynamics, torsion angle dynamics | AutoAssign | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function,structures with the least restraint violations |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (fewest violations) |
| Additional NMR Experimental Information | |
|---|---|
| Details | The structure was determined using GFT NMR spectroscopy. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | data analysis | AutoAssign | 1.13 | Zimmerman |
| 2 | processing | NMRPipe | 2.3 | Delaglio |
| 3 | data analysis | XEASY | 1.3.1.3 | Bartels |
| 4 | structure solution | DYANA | 1.5 | Guenter |
| 5 | data analysis | AutoStructure | 2.0.0 | Huang |
| 6 | data analysis | CYANA | 1.1 | Guenter |
| 7 | refinement | DYANA | 1.5 | Guenter |
