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The Crystal structure of the Zb domain from the RNA editing enzyme ADAR1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 312 PEG1000, Cadmium Chloride, Nickel Chloride, Tris, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 312K, pH 9.00
Crystal Properties Matthews coefficient Solvent content 1.7 27.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.557 α = 90 b = 43.526 β = 90 c = 45.471 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-01-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.97 27.92 99.2 0.075 5.2 4.1 41638 1 6.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 0.97 1.02 94.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT WITH THE EXCEPTION OF THE LAST TWO REFINEMENT CYCLES 0.97 10 42408 40681 4051 95.8 0.145 0.145 0.1467 0.183 0.1557 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 4
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.111 s_approx_iso_adps 0.104 s_zero_chiral_vol 0.063 s_similar_dist 0.062 s_angle_d 0.035 s_from_restr_planes 0.028 s_bond_d 0.018 s_anti_bump_dis_restr 0.016 s_rigid_bond_adp_cmpnt s_similar_adp_cmpnt
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 663 Nucleic Acid Atoms Solvent Atoms 125 Heterogen Atoms 5
Software Software Software Name Purpose SHELX refinement MOSFLM data reduction CCP4 data scaling SHARP phasing SHELXL refinement