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Chorismate mutase from Clostridium thermocellum Cth-682
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.6 291 2.5M ammonium sulfate, 0.1M HEPES, pH 7.6, vapor diffusion, temperature 291K, pH 7.60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.201 α = 90 b = 48.201 β = 90 c = 123.693 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 10 93.3 0.057 15073
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 42.9 0.167
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 9.96 15049 765 100 0.198 0.194 0.201 0.255 0.258 THIN SHELLS 29.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.221 -0.111 -0.221 0.332
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.576 r_dihedral_angle_3_deg 12.896 r_dihedral_angle_4_deg 10.139 r_dihedral_angle_1_deg 6.321 r_scangle_it 2.849 r_mcangle_it 2.744 r_mcbond_it 2.09 r_scbond_it 2.007 r_angle_refined_deg 1.103 r_angle_other_deg 0.733
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.576 r_dihedral_angle_3_deg 12.896 r_dihedral_angle_4_deg 10.139 r_dihedral_angle_1_deg 6.321 r_scangle_it 2.849 r_mcangle_it 2.744 r_mcbond_it 2.09 r_scbond_it 2.007 r_angle_refined_deg 1.103 r_angle_other_deg 0.733 r_mcbond_other 0.415 r_nbd_refined 0.193 r_symmetry_vdw_other 0.17 r_nbd_other 0.169 r_nbtor_refined 0.157 r_xyhbond_nbd_refined 0.134 r_symmetry_hbond_refined 0.118 r_symmetry_vdw_refined 0.094 r_nbtor_other 0.08 r_chiral_restr 0.062 r_bond_refined_d 0.012 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2569 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction