1XHJ
Solution Structure Of The Staphylococcus Epidermidis Protein SE0630. Northest Structural Genomics Consortium Target SeR8.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | C13-HSQC | 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 5% C13, 100% N15 | 5% D2O, 95% H20 | 100 mM NaCl | 6.5 | 1 atm | 293 | |
2 | NH-HSQC | 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 100% C13, 100% N15 | 5% D2O, 95% H20 | 100 mM NaCl | 6.5 | 1 atm | 293 | |
3 | HNCO | 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 100% C13, 100% N15 | 5% D2O, 95% H20 | 100 mM NaCl | 6.5 | 1 atm | 293 | |
4 | HNCAB | 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 100% C13, 100% N15 | 5% D2O, 95% H20 | 100 mM NaCl | 6.5 | 1 atm | 293 | |
5 | N15-NOESY | 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 100% C13, 100% N15 | 5% D2O, 95% H20 | 100 mM NaCl | 6.5 | 1 atm | 293 | |
6 | C13-NOESY | 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 100% C13, 100% N15 | 5% D2O, 95% H20 | 100 mM NaCl | 6.5 | 1 atm | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Bruker | AVANCE | 500 |
3 | Bruker | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | The structure is based on a total of 1311 conformationally restricting non-derived distance restraints. The structure contains 14.9 restraints per residue, with 3.5 long range restraints per residue. Structure determination was performed iteratively using AutoStructure. | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple resonance nmr spectroscopy. Automatic backbone assignments were made using AutoAssign. Automatic NOESY assignments were made using AutoStructure. Dihedral angle restraints were made using HYPER and Talos. The SPINS database software was used as an integrating agent. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | 2.9.7 | Brunger |
2 | processing | NMRPipe | 2.1 | Delaglio |
3 | data analysis | AutoAssign | 1.14 | Zimmerman, Moseley, Montelione |
4 | data analysis | AutoStructure | 2.0 | Huang, Montelione |
5 | data analysis | SPINS | 5.0 | Baran, Montelione |
6 | data analysis | HYPER | 3.2 | Tejero, Montelione |
7 | data analysis | Sparky | 3.106 | Goddard |
8 | collection | VNMR | 6.1 | varian |
9 | collection | xwin-nmr | Bruker | |
10 | refinement | X-PLOR | 2.9.7 | Brunger |